Open-source Software

Source code distributed under GPL license.

PhenoRipper
PhenoRipper is an easy to use image analysis software package that enables rapid exploration and interpretation of microscopy data.
http://www.phenoripper.org

To cite PhenoRipper in your publication, please use the following:
Satwik Rajaram, Benjamin Pavie, Lani F Wu & Steven J Altschuler,
PhenoRipper: software for rapidly profiling microscopy images. Nature Methods | Vol. 9 No. 7 | July 2012 | 635-637


SimuCell
SimCell is a framework to synthetically generate fluorescent microscopic images of cellular population.
http://www.simucell.org

To cite SimuCell in your publication, please use the following:

Satwik Rajaram, Benjamin Pavie, Nicholas E F Hac , Lani F Wu & Steven J Altschuler, SimuCell: a flexible framework for creating synthetic microscopy images. Nature Methods | Vol. 9 No. 7 | July 2012 | 634-635